PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.85BTF
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 306aa    MW: 33397.2 Da    PI: 10.2761
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.85BTFgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-14104148347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
      Aradu.85BTF 104 PWTEEEHKLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKY 148
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.631520IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.01397153IPR017930Myb domain
SuperFamilySSF466891.05E-1699152IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-16100151IPR006447Myb domain, plants
SMARTSM007171.3E-10101151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-10103148IPR009057Homeodomain-like
CDDcd001671.04E-9104149No hitNo description
PfamPF002498.0E-12104148IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSRTCSQCGN NGHNSRTCTD ASLAAGSVSG GGTPQRENGI MLFGVRLTTT EGTSSSFRKS  60
ASMGNLSQFD QQPPQDPIVA DAGYVSDDVV HASGRSRERK RGVPWTEEEH KLFLLGLHKV  120
GKGDWRGISR NFVKTRTPTQ VASHAQKYFL RRHNQNRRRR RSSLFDITTD TVMESSAMME  180
EQVQQETVAP PTPSTYSSSN YNNLSSSTFP MALSSVMLPL AAKPIRPTPI LPVPPSSKMA  240
NLNLKEKITL NTEFRPPPFV LNLGPQQFRN QSPDENNDRS SPSSSSTSSF QAGNFNGGGD  300
SIISVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00630PBMTransfer from PK17526.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2086700.0KF208670.1 Arachis hypogaea putative MYB-related protein 16 (MYB16) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015965321.10.0PREDICTED: transcription factor MYB1R1
SwissprotQ2V9B04e-46MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLV5T6880.0V5T688_ARAHY; Putative MYB-related protein 16
STRINGGLYMA02G03020.11e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53383350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.22e-77MYB_related family protein